News|Articles|January 13, 2026

Contagion

  • Contagion, Fall/Winter 2025-2026 Digital Edition
  • Volume 10
  • Issue 3

Invasive Fungal Disease in Transplantation: Prevention in a Shifting Landscape

Invasive fungal diseases remain a major cause of morbidity and mortality in patients undergoing transplant, with shifting epidemiology, emerging resistance, and geographic variation underscoring the urgent need for improved surveillance, prevention strategies, and antifungal stewardship.

For a patient recovering from a lifesaving transplant, an invasive fungal disease (IFD) can derail months of progress in just days. Depending on the transplant type, more than 1 in 12 patients may develop an IFD within the first year of transplantation.1,2 Even with modern antifungals, IFDs still kill approximately 1 in 3 patients.1,2

Despite the public health and clinical importance of IFDs, we still do not have a clear understanding of exactly which patients undergoing transplant will contract them and why. That is because surveillance for IFDs in transplant populations is limited or altogether lacking, leading to an unclear national and global picture. The most comprehensive study of IFDs in US patients undergoing transplant comes from the Transplant-Associated Infections Surveillance Network (TRANSNET), which conducted surveillance for IFDs among solid organ transplant (SOT) and hematopoietic stem cell transplant (HSCT) recipients at a network of 23 transplant centers from 2001 to 2006.1,2 Since then, data on the epidemiology and risk factors for IFDs in transplant recipients have been limited to much smaller studies, primarily at single centers.3-5

This is problematic because the types and rates of fungal infections in transplant recipients may vary widely among centers based on geography, climate, and local clinical practices.6 As a first step in addressing this data gap, we explored a large commercial health insurance claims database to provide updated benchmark data.6 Although our study had important limitations, especially with representativeness and its reliance on International Classification of Diseases, Tenth Revision codes, we gained insight into current IFD epidemiology. Classically, IFDs in patients undergoing transplant have been characterized by early Candida infections followed by later Aspergillus infections.1,2,7,8

In our analysis, candidiasis still generally occurred earlier than invasive mold infections for both SOT and HSCT recipients. Notably, patients undergoing HSCT in our study experienced infections later (169 days for candidiasis and 172-349 days for other IFD types) than patients undergoing HSCT in the TRANSNET study (61 days for candidiasis and ~100-150 days for other IFD types).2 We also found that a higher-than-anticipated percentage of IFDs were due to invasive mold infections compared with invasive candidiasis, particularly in patients undergoing SOT.6

IFDs caused by blastomycosis, coccidioidomycosis, and histoplasmosis were more frequent in both SOT (15.6%) and HSCT (4.1%) recipients than previously reported in the TRANSNET study, where these diseases made up 5% or less of IFDs in SOT recipients and less than 1% in HSCT recipients.6 This is a notable finding given that recent data have demonstrated a substantial expansion of the traditional geographic areas associated with these so-called endemic fungi.9 We also found that aspergillosis and mucormycosis were highest in the Northeast among SOT recipients, highest in the West among HSCT recipients, and lowest in the South for both groups, which merits further study and underscores the importance of understanding geographic epidemiologic trends.6 The epidemiology of IFDs is shifting, both in infection types and in species’ resistance profiles.10 Although studies specifically examining transplant populations are generally lacking, several major trends have emerged. Candida albicans has been declining as the main causative organism of candidemia, which is concerning, as non-albicans species can be associated with poorer outcomes and more frequent antifungal resistance.11,12 Breakthrough invasive yeast infections on fluconazole prophylaxis and the rise of fluconazole-resistant Candida parapsilosis and echinocandin-resistant Candida glabrata have complicated treatment of many transplant recipients.13 Further, highly drug-resistant fungal pathogens such as Candida auris have recently emerged and rapidly spread globally, prompting concern about the potential impact on the transplant population.14 For mold infections, the rise of rare and difficult-to-treat molds such as Fusarium and Lomentospora has been noted in recent years among immunocompromised hosts despite the use of antifungal prophylaxis.15 The past few decades have also witnessed the devastating effects of health care–associated outbreaks of rare mold infections linked to environmental contamination of water sources, hospital construction, and even bed linens.16-19

However, the transplantation care community has achieved notable success in preventing IFDs in transplant recipients. The use of fluconazole in patients undergoing HSCT has substantially reduced the incidence of early candidemia.20 Moldactive azoles, such as voriconazole and posaconazole, have proven effective in decreasing the occurrence of invasive aspergillosis among patients with high-risk disease undergoing HSCT.21 Certain SOT populations, particularly lung and liver transplant recipients, also benefit from targeted antifungal prophylaxis strategies.22 Beyond antifungal prophylaxis, the transplantation care community has also made major strides in enhancing the safety of health care environments for patients. The implementation of high-efficiency particulate air (HEPA) filtration systems and positive pressure rooms has been an essential strategy for minimizing exposure to airborne fungal pathogens.23

Increased awareness and proactive measures to prevent outbreaks related to construction activities and health care linens have further protected patients from health care–associated mold infections.18,24 Infection prevention and control measures, including improved care for central lines, have also contributed to a reduction in Candida bloodstream infections.12 With the successes of antifungal prophylaxis have come unanticipated new challenges and potential obstacles. Prophylaxis may contribute to increased incidence of breakthrough mold infections, particularly those involving Mucorales and Fusarium.25,26 These infections may require treatment with different and often more toxic antifungals and have a high associated mortality.15 Selection pressure from fluconazole use may be driving a shift to non-albicans species.27 Challenges with toxicity and drug interactions persist, such as difficulties in tolerating trimethoprim-sulfamethoxazole for Pneumocystis pneumonia prophylaxis and the myriad of toxicities associated with voriconazole and other triazoles.28,29

In addition, new drugs for preventing graft-vs-host disease or cancer relapse after HSCT can lead to important drug-drug interactions with common antifungals.30 Finally, these antifungal prophylaxis medications are often costly and challenges with insurance coverage frequently impede access.31 Thus, it is important to incorporate antifungal stewardship efforts at any transplant center to ensure that the right patient is receiving the right medication at the right time.32 Novel targeted and pan-fungal molecular tests represent real progress. However, these tests remain unavailable in many clinical settings and culture remains the gold standard.33 Continued development of new diagnostic technologies in the field of mycology is critical especially for rapid detection of antifungal resistance given the rise of this phenomenon globally.34

The application of diagnostic stewardship to guide clinicians in the optimal use of these new tests will be a valuable component of care moving forward.35 We still have room for improvements in managing environmental conditions. HEPA filtration systems are important for keeping patients safe, but hospital surveillance for invasive mold diseases is variable among facilities and standardized approaches and evidence for effective environmental mold monitoring are lacking.36

In addition, a shift toward performing HSCT procedures outside of the hospital setting may affect the risk for fungal infections in the future, and close monitoring of these patients is warranted.37 Counseling patients about the potential risks of IFD in the community and how to avoid them is a critical part of transplant care.38 To effectively prevent IFDs and assess the success of our prevention efforts, we need to understand disease epidemiology. Specifically, rigorous epidemiological studies that use standardized case definitions and integrate detailed information on environmental factors, electronic medical record data, and prophylaxis practices could greatly enhance our understanding of who is at risk and which prevention strategies are most effective.39,40 These comprehensive data could help us continuously refine our strategies— both pharmacologic and nonpharmacologic— tailored to the evolving landscape of IFDs. As new drugs, an increasing number of patients undergoing transplant, innovative practices, and advanced technologies emerge, adapting our approaches accordingly could help ensure optimal IFD prevention and management.

Disclaimer: The findings and conclusions in this report are those of the authors and do not necessarily represent the official position of the Centers for Disease Control and Prevention.

References
1.Pappas PG, Alexander BD, Andes DR, et al. Invasive fungal infections among organ transplant recipients: results of the Transplant-Associated Infection Surveillance Network (TRANSNET). Clin Infect Dis. 2010;50(8):1101-1111. doi:10.1086/651262
2.Kontoyiannis DP, Marr KA, Park BJ, et al. Prospective surveillance for invasive fungal infections in hematopoietic stem cell transplant recipients, 2001-2006: overview of the Transplant-Associated Infection Surveillance Network (TRANSNET) database. Clin Infect Dis. 2010;50(8):1091-1100. doi:10.1086/651263
3.Phoompoung P, Herrera S, Pérez Cortés Villalobos A, Foroutan F, Orchanian-Cheff A, Husain S. Risk factors of invasive fungal infections in liver transplant recipients: a systematic review and meta-analysis. Am J Transplant. 2022;22(4):1213-1229. doi:10.1111/ajt.16935
4.Pennington KM, Martin MJ, Murad MH, et al. Risk factors for early fungal disease in solid organ transplant recipients: a systematic review and meta-analysis. Transplantation. 2024;108(4):970-984. doi:10.1097/TP.0000000000004871
5.Biyun L, Yahui H, Yuanfang L, Xifeng G, Dao W. Risk factors for invasive fungal infections after haematopoietic stem cell transplantation: a systematic review and meta-analysis. Clin Microbiol Infect. 2024;30(5):601-610. doi:10.1016/j.cmi.2024.01.005
6.Gold JAW, Benedict K, Sajewski E, et al. Invasive fungal disease in solid organ and hematopoietic cell transplant recipients, United States. Transpl Infect Dis. 2025;e70077. doi:10.1111/tid.70077
7.Neofytos D, Horn D, Anaissie E, et al. Epidemiology and outcome of invasive fungal infection in adult hematopoietic stem cell transplant recipients: analysis of multicenter Prospective Antifungal Therapy (PATH) Alliance registry. Clin Infect Dis. 2009;48(3):265-273. doi:10.1086/595846
8.Pagano L, Caira M, Nosari A, et al. Fungal infections in recipients of hematopoietic stem cell transplants: results of the SEIFEM B-2004 study--Sorveglianza Epidemiologica Infezioni Fungine Nelle Emopatie Maligne. Clin Infect Dis. 2007;45(9):1161-1170. doi:10.1086/522189
9.Mazi PB, Sahrmann JM, Olsen MA, et al. The geographic distribution of dimorphic mycoses in the United States for the modern era. Clin Infect Dis. 2023;76(7):1295-1301. doi:10.1093/cid/ciac882
10.Thompson GR 3rd, Chen SCA, Alfouzan WA, Izumikawa K, Colombo AL, Maertens JA. A global perspective of the changing epidemiology of invasive fungal disease and real-world experience with the use of isavuconazole. Med Mycol. 2024;62(9):myae083. doi:10.1093/mmy/myae083
11.Lamoth F, Lockhart SR, Berkow EL, Calandra T. Changes in the epidemiological landscape of invasive candidiasis. J Antimicrob Chemother. 2018;73(suppl 1):i4-i13. doi:10.1093/jac/dkx444
12.Jenkins EN, Gold JAW, Benedict K, et al. Population-based active surveillance for culture-confirmed candidemia - 10 sites, United States, 2017-2021. MMWR Surveill Summ. 2025;74(4):1-15. doi:10.15585/mmwr.ss7404a1
13.Giannella M, Lanternier F, Dellière S, et al. Invasive fungal disease in the immunocompromised host: changing epidemiology, new antifungal therapies, and management challenges. Clin Microbiol Infect. 2025;31(1):29-36. doi:10.1016/j.cmi.2024.08.006
14.Rhodes J, Fisher MC. Global epidemiology of emerging Candida auris. Curr Opin Microbiol. 2019;52:84-89. doi:10.1016/j.mib.2019.05.008
15.Lamoth F, Chung SJ, Damonti L, Alexander BD. Changing epidemiology of invasive mold infections in patients receiving azole prophylaxis. Clin Infect Dis. 2017;64(11):1619-1621. doi:10.1093/cid/cix130
16.Raviv Y, Kramer MR, Amital A, Rubinovitch B, Bishara J, Shitrit D. Outbreak of aspergillosis infections among lung transplant recipients. Transpl Int. 2007;20(2):135-140. doi:10.1111/j.1432-2277.2006.00411.x
17.Jordan A, James AE, Gold JAW, et al. Investigation of a prolonged and large outbreak of healthcare-associated mucormycosis cases in an acute care hospital-Arkansas, June 2019-May 2021. Open Forum Infect Dis. 2022;9(10):ofac510. doi:10.1093/ofid/ofac510
18.Glowicz J, Benowitz I, Arduino MJ, et al. Keeping health care linens clean: underrecognized hazards and critical control points to avoid contamination of laundered health care textiles. Am J Infect Control. 2022;50(10):1178-1181. doi:10.1016/j.ajic.2022.06.026
19.Litvinov N, da Silva MTN, van der Heijden IM, et al. An outbreak of invasive fusariosis in a children’s cancer hospital. Clin Microbiol Infect. 2015;21(3):268.e1-268.e7. doi:10.1016/j.cmi.2014.09.004
20.Neofytos D, Steinbach WJ, Hanson K, Carpenter PA, Papanicolaou GA, Slavin MA. American Society for Transplantation and Cellular Therapy series, #6: management of invasive candidiasis in hematopoietic cell transplantation recipients. Transplant Cell Ther. 2023;29(4):222-227. doi:10.1016/j.jtct.2023.01.011
21.Su HC, Hua YM, Feng IJ, Wu HC. Comparative effectiveness of antifungal agents in patients with hematopoietic stem cell transplantation: a systematic review and network meta-analysis. Infect Drug Resist. 2019;12:1311-1324. doi:10.2147/IDR.S203579
22.Kriegl L, Boyer J, Egger M, Hoenigl M. Antifungal stewardship in solid organ transplantation. Transpl Infect Dis. 2022;24(5):e13855. doi:10.1111/tid.13855
23.Mareković I. What’s new in prevention of invasive fungal diseases during hospital construction and renovation work: an overview. J Fungi (Basel). 2023;9(2):151. doi:10.3390/jof9020151
24.Hartnett KP, Jackson BR, Perkins KM, et al. A guide to investigating suspected outbreaks of mucormycosis in healthcare. J Fungi (Basel). 2019;5(3):69. doi:10.3390/jof5030069
25.Vallabhaneni S, Benedict K, Derado G, Mody RK. Trends in hospitalizations related to invasive aspergillosis and mucormycosis in the United States, 2000-2013. Open Forum Infect Dis. 2017;4(1):ofw268. doi:10.1093/ofid/ofw268
26.Lionakis MS, Lewis RE, Kontoyiannis DP. Breakthrough invasive mold infections in the hematology patient: current concepts and future directions. Clin Infect Dis. 2018;67(10):1621-1630. doi:10.1093/cid/ciy473
27.Berkow EL, Lockhart SR. Fluconazole resistance in Candida species: a current perspective. Infect Drug Resist. 2017;10:237-245. doi:10.2147/IDR.S118892
28.Stern A, Green H, Paul M, Vidal L, Leibovici L. Prophylaxis for Pneumocystis pneumonia (PCP) in non-HIV immunocompromised patients. Cochrane Database Syst Rev. 2014;2014(10):CD005590. doi:10.1002/14651858.CD005590.pub3
29.Yang YL, Xiang ZJ, Yang JH, Wang WJ, Xu ZC, Xiang RL. Adverse effects associated with currently commonly used antifungal agents: a network meta-analysis and systematic review. Front Pharmacol. 2021;12:697330. doi:10.3389/fphar.2021.697330
30.Lewis R, Niazi-Ali S, McIvor A, et al. Triazole antifungal drug interactions-practical considerations for excellent prescribing. J Antimicrob Chemother. 2024;79(6):1203-1217. doi:10.1093/jac/dkae103
31.Alsuhibani AA, Alobaid NA, Alahmadi MH, et al. Antifungal agents’ trends of utilization, spending, and prices in the US Medicaid programs: 2009-2023. Antibiotics (Basel). 2025;14(5):518. doi:10.3390/antibiotics14050518
32.Johnson MD, Lewis RE, Dodds Ashley ES, et al. Core recommendations for antifungal stewardship: a statement of the Mycoses Study Group Education and Research Consortium. J Infect Dis. 2020;222(suppl 3):S175-S198. doi:10.1093/infdis/jiaa394
33.Terrero-Salcedo D, Powers-Fletcher MV. Updates in laboratory diagnostics for invasive fungal infections. J Clin Microbiol. 2020;58(6):e01487-19. doi:10.1128/jcm.01487-19
34.Lockhart SR, Chowdhary A, Gold JAW. The rapid emergence of antifungal-resistant human-pathogenic fungi. Nat Rev Microbiol. 2023;21(12):818-832. doi:10.1038/s41579-023-00960-9
35.Chakrabarti A, Mohamed N, Capparella MR, et al. The role of diagnostics-driven antifungal stewardship in the management of invasive fungal infections: a systematic literature review. Open Forum Infect Dis. 2022;9(7):ofac234. doi:10.1093/ofid/ofac234
36.Gold JAW, Jackson BR, Glowicz J, Mead KR, Beer KD. Surveillance practices and air-sampling strategies to address healthcare-associated invasive mold infections in Society for Healthcare Epidemiology of America (SHEA) Research Network hospitals-United States, 2020. Infect Control Hosp Epidemiol. 2022;43(11):1708-1711. doi:10.1017/ice.2021.285
37.Stiff P, Mumby P, Miler L, et al. Autologous hematopoietic stem cell transplants that utilize total body irradiation can safely be carried out entirely on an outpatient basis. Bone Marrow Transplant. 2006;38(11):757-764. doi:10.1038/sj.bmt.1705525
38.Shoham S, Marr KA. Invasive fungal infections in solid organ transplant recipients. Future Microbiol. 2012;7(5):639-655. doi:10.2217/fmb.12.28
39.Webb BJ, Ferraro JP, Rea S, Kaufusi S, Goodman BE, Spalding J. Epidemiology and clinical features of invasive fungal infection in a US health care network. Open Forum Infect Dis. 2018;5(8):ofy187. doi:10.1093/ofid/ofy187
40.Wang S, Yang J. Epidemiology of invasive fungal diseases after solid-organ and hematopoietic cell transplantation: insights from a large US cohort (2018-2022). Transpl Infect Dis. 2025;e70095. doi:10.1111/tid.70095

Newsletter

Stay ahead of emerging infectious disease threats with expert insights and breaking research. Subscribe now to get updates delivered straight to your inbox.


Latest CME